STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGY53832.1TPR Domain-Containing Protein. (221 aa)    
Predicted Functional Partners:
AGY54076.1
Hypothetical protein.
  
     0.756
AGY53143.1
Hypothetical protein.
  
     0.751
AGY53833.1
Hypothetical protein.
       0.748
AGY54007.1
Hypothetical protein.
 
     0.736
rpsU
30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.721
AGY53891.1
Hypothetical protein.
  
     0.714
AGY53477.1
Hypothetical protein.
  
     0.714
AGY54198.1
Hypothetical protein.
 
     0.706
rpsT
30S ribosomal protein S20.
  
     0.706
AGY54796.1
Hypothetical protein.
  
     0.686
Your Current Organism:
Bacteroidales bacterium CF
NCBI taxonomy Id: 1400053
Other names: B. bacterium CF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.