STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGY52748.1TPR Repeat-Containing Protein. (589 aa)    
Predicted Functional Partners:
yibD
Glycosyl Transferase Family Protein.
       0.774
AGY52749.1
Lipolytic Protein G-D-S-L Family.
 
     0.620
aspA
Aspartate ammonia-lyase.
       0.526
AGY53787.1
TPR repeat-containing protein.
 
   0.467
AGY52750.1
Hypothetical protein.
       0.442
AGY54861.1
TPR Repeat-Containing Protein.
 
   0.405
Your Current Organism:
Bacteroidales bacterium CF
NCBI taxonomy Id: 1400053
Other names: B. bacterium CF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.