STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGY53857.1Hypothetical protein. (169 aa)    
Predicted Functional Partners:
AGY53858.1
RNA Polymerase Sigma-24 Subunit ECF Subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.842
AGY53855.1
Hypothetical protein.
       0.655
AGY53856.1
Hypothetical protein.
       0.655
AGY54837.1
Hypothetical protein.
  
     0.571
AGY54343.1
Hypothetical protein.
  
     0.541
AGY53854.1
Hypothetical protein.
  
     0.509
dapL
LL-diaminopimelate aminotransferase.
  
     0.504
AGY53859.1
Acyl Carrier Protein.
       0.493
AGY53268.1
Hypothetical protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity.
  
     0.490
AGY53286.1
Alpha-L-Rhamnosidase.
  
     0.454
Your Current Organism:
Bacteroidales bacterium CF
NCBI taxonomy Id: 1400053
Other names: B. bacterium CF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.