STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytRSensory transduction protein lytR. (252 aa)    
Predicted Functional Partners:
lytS
Sensor protein lytS.
 
 
 0.962
ypdB
Putative response regulatory protein.
  
  
 
0.910
AGY54893.1
Inner membrane protein ypdA.
 
 
 0.836
ypdA
Inner membrane protein ypdA.
 
 
 0.832
AGY53897.1
Hypothetical protein.
       0.550
AGY54333.1
Two Component Transcriptional Regulator LytTR Family.
  
     0.525
AGY53255.1
Signal transduction histidine-protein kinase BarA.
  
 
 0.437
Your Current Organism:
Bacteroidales bacterium CF
NCBI taxonomy Id: 1400053
Other names: B. bacterium CF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.