STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGY53906.1Hypothetical protein. (244 aa)    
Predicted Functional Partners:
polC
DNA polymerase III polC-type.
      0.698
AGY53905.1
Autoinducer 2 sensor kinase/phosphatase luxQ.
       0.628
AGY52751.1
Glyoxalase/Bleomycin Resistance Protein/Dioxygenase.
  
     0.565
AGY53907.1
Pentapeptide Repeat-Containing Protein.
       0.543
AGY53908.1
Hypothetical protein.
       0.543
AGY53909.1
Putative NAD(P)H nitroreductase.
       0.540
AGY53910.1
Putative glyoxylase family protein (Lactoylglutathione lyase).
       0.540
ybaC
Putative aminopeptidase ybaC.
  
     0.418
Your Current Organism:
Bacteroidales bacterium CF
NCBI taxonomy Id: 1400053
Other names: B. bacterium CF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.