STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGY53970.1Putative L-lactate dehydrogenase, hypothetical protein subunit. (181 aa)    
Predicted Functional Partners:
ykgF
Putative L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF.
 
 
 0.993
lutA
Putative L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE.
 
 
 0.970
AGY54055.1
Hypothetical protein.
  
 
 0.755
AGY53528.1
Hypothetical protein.
  
 
 0.755
hdrB
CoB--CoM heterodisulfide reductase subunit B.
  
 
 0.658
AGY54445.1
CoB--CoM heterodisulfide reductase subunit B.
  
 
 0.658
agaB
Beta-agarase B.
       0.655
hdrD
CoB--CoM heterodisulfide reductase 2 iron-sulfur subunit D.
  
 
 0.618
AGY54769.1
Hypothetical protein.
  
 
 0.618
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
  
 0.589
Your Current Organism:
Bacteroidales bacterium CF
NCBI taxonomy Id: 1400053
Other names: B. bacterium CF
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