STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capACapsule biosynthesis protein CapA. (339 aa)    
Predicted Functional Partners:
phoH
PhoH-like protein.
       0.784
AGY54249.1
Hypothetical protein.
       0.549
AGY54247.1
Hypothetical protein.
  
    0.524
gloA
Glyoxalase/Bleomycin Resistance Protein/Dioxygenase.
       0.522
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
       0.522
AGY54245.1
Aminopeptidase YwaD.
       0.491
yddE
Putative isomerase.
       0.415
leuS
Leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.415
AGY54241.1
Hypothetical protein.
       0.412
AGY54242.1
Hypothetical protein.
       0.412
Your Current Organism:
Bacteroidales bacterium CF
NCBI taxonomy Id: 1400053
Other names: B. bacterium CF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.