STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGY54279.1XRE Family Transcriptional Regulator. (109 aa)    
Predicted Functional Partners:
AGY54278.1
HipA Domain-Containing Protein.
 
 
 0.971
hipA
Putative kinase Y4dM.
 
 
 0.592
AGY54685.1
HipA N-Terminal Domain-Containing Protein.
 
 
 0.519
AGY53851.1
Hypothetical protein.
  
 
 0.490
AGY54281.1
GCN5-Related N-Acetyltransferase.
 
  
 0.477
AGY54277.1
Hypothetical protein.
       0.448
AGY54280.1
Hypothetical protein.
       0.420
AGY54862.1
Hypothetical protein.
  
    0.418
Your Current Organism:
Bacteroidales bacterium CF
NCBI taxonomy Id: 1400053
Other names: B. bacterium CF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.