STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptpProlyl tri/tetrapeptidyl aminopeptidase. (436 aa)    
Predicted Functional Partners:
AGY54820.1
Hypothetical protein.
       0.773
AGY53347.1
IgA Peptidase.
  
     0.664
tyrS
Tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
       0.565
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.565
tlyC
Hemolysin C.
       0.553
lolE
Lipoprotein-releasing system transmembrane protein lolC.
       0.551
AGY54462.1
Cytochrome C Biogenesis Protein Transmembrane Region.
  
     0.540
AGY54818.1
4-Phosphopantetheinyl Transferase; Belongs to the P-Pant transferase superfamily.
       0.517
AGY54384.1
Transglutaminase Domain-Containing Protein.
  
    0.442
acrF
Acriflavine resistance protein F; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
     0.437
Your Current Organism:
Bacteroidales bacterium CF
NCBI taxonomy Id: 1400053
Other names: B. bacterium CF
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.