STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGY53008.1Hypothetical protein. (471 aa)    
Predicted Functional Partners:
AGY53010.1
Hypothetical protein.
      0.938
AGY53009.1
Putative transposase y4zB.
  
    0.727
yeeA
Putative DNA methyltransferase yeeA.
  
    0.686
AGY54124.1
Hypothetical protein.
  
    0.557
hsdM
Type I restriction-modification system, DNA-methyltransferase subunit M.
  
  
 0.485
AGY53765.1
Putative transposase y4zB.
  
    0.453
AGY52762.1
Putative transposase y4zB.
  
    0.453
AGY54073.1
Putative transposase y4zB.
  
    0.453
AGY54314.1
Putative transposase y4zB.
  
    0.453
AGY53173.1
Putative transposase y4zB.
  
    0.453
Your Current Organism:
Bacteroidales bacterium CF
NCBI taxonomy Id: 1400053
Other names: B. bacterium CF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.