STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ETY74898.1Prepilin; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)    
Predicted Functional Partners:
ETY73810.1
Secretion protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.780
ETY73809.1
Secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.698
ETY74214.1
DNA processing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.684
ETY73963.1
Competence protein ComEA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.649
ETY73895.1
Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.559
ETY73961.1
Competence protein ComEC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.552
ETY73871.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.535
ETY73808.1
Type II secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.535
scpA
Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
   
    0.515
ETY75266.1
Competence protein ComF; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.513
Your Current Organism:
Lactobacillus fabifermentans
NCBI taxonomy Id: 1400520
Other names: L. fabifermentans T30PCM01, Lactobacillus fabifermentans T30PCM01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.