STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000511175_00936Unannotated protein. (240 aa)    
Predicted Functional Partners:
GCA_000511175_01888
Unannotated protein.
 0.993
GCA_000511175_01965
Unannotated protein.
 
 
 0.924
GCA_000511175_00461
Unannotated protein.
    
 0.810
GCA_000511175_00935
Unannotated protein.
       0.805
GCA_000511175_00934
Unannotated protein.
       0.804
GCA_000511175_00933
Unannotated protein.
    
  0.768
GCA_000511175_02665
Unannotated protein.
  
 
 0.752
GCA_000511175_00118
Unannotated protein.
    
 0.675
GCA_000511175_01506
Unannotated protein.
  
 
 0.623
GCA_000511175_02609
Unannotated protein.
    
  0.613
Your Current Organism:
Sediminibacterium salmoneum
NCBI taxonomy Id: 1400522
Other names: S. salmoneum NBRC 103935, Sediminibacterium salmoneum NBRC 103935, Sediminibacterium salmoneum NJ-44, bacterium NJ-44
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.