STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OME96231.1Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)    
Predicted Functional Partners:
OME91624.1
Flagellar biosynthesis protein FlgL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.791
OME89548.1
Flagellar motor switch phosphatase FliY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.749
FliI
Flagellar protein export ATPase FliI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.732
OME96230.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.726
thiI
tRNA 4-thiouridine(8) synthase ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
  
    0.726
OME96232.1
Cysteine desulfurase NifS; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.720
OME91629.1
Flagellar hook protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.694
OME96229.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.684
fliE
Flagellar hook-basal body complex protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.659
OME91600.1
Flagellar basal body rod protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.
 
 
 0.649
Your Current Organism:
Paenibacillus lautus
NCBI taxonomy Id: 1401
Other names: ATCC 43898, Bacillus lautus, CIP 103118, DSM 3035, IFO 15380, JCM 9073, LMG 11157, LMG:11157, NBRC 15380, NRRL NRS-666, P. lautus, Paenibacillus sp. HF_07
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