STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OME90125.1Thiol-disulfide oxidoreductase DCC; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)    
Predicted Functional Partners:
OME90126.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.753
OME90120.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.548
OME90121.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.548
OME90378.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.537
OME90119.1
Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.536
OME95238.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.530
OME95237.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.470
OME90118.1
Type II secretion protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.467
OME96334.1
General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.403
Your Current Organism:
Paenibacillus lautus
NCBI taxonomy Id: 1401
Other names: ATCC 43898, Bacillus lautus, CIP 103118, DSM 3035, IFO 15380, JCM 9073, LMG 11157, LMG:11157, NBRC 15380, NRRL NRS-666, P. lautus, Paenibacillus sp. HF_07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.