STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bdbDProtein-disulfide isomerase. (249 aa)    
Predicted Functional Partners:
loiP
Putative Zn-dependent protease, contains TPR repeats.
  
    0.813
SHG11426.1
Suppressor for copper-sensitivity B.
  
 
 0.701
SHG33287.1
Thiol:disulfide interchange protein DsbD.
  
 
 0.701
SHF26874.1
Thiol-disulfide interchange protein, contains DsbC and DsbD domains.
 
 
 0.642
aspC-2
Aspartate/methionine/tyrosine aminotransferase.
  
    0.625
SHG11638.1
Disulfide bond formation protein DsbB.
  
 
 0.554
SHF77521.1
Disulfide bond formation protein DsbB.
  
 
 0.545
mrcA
Penicillin-binding protein 1A.
 
     0.537
bamD
Beta-barrel assembly machine subunit BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.524
amiA
N-acetylmuramoyl-L-alanine amidase.
  
  
 0.520
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.