STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
loiPPutative Zn-dependent protease, contains TPR repeats. (438 aa)    
Predicted Functional Partners:
bdbD
Protein-disulfide isomerase.
  
    0.813
aspC-2
Aspartate/methionine/tyrosine aminotransferase.
       0.726
SHF53598.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
   
 
 0.648
amiA
N-acetylmuramoyl-L-alanine amidase.
  
    0.483
SHE51090.1
Hypothetical protein.
  
     0.477
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.451
SHF75942.1
Hypothetical protein.
  
     0.422
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.