STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
metRLysR family transcriptional regulator, regulator for metE and metH; Belongs to the LysR transcriptional regulatory family. (301 aa)    
Predicted Functional Partners:
SHE43883.1
Hypothetical protein.
       0.675
metF
5,10-methylenetetrahydrofolate reductase (NAD(P)); Belongs to the methylenetetrahydrofolate reductase family.
  
  
 0.612
SHF90720.1
Transcriptional regulator, LysR family.
  
     0.610
SHE43329.1
DNA-binding transcriptional regulator, LysR family.
  
     0.590
SHE67150.1
DNA-binding transcriptional regulator, LysR family.
  
     0.587
SHF54654.1
Transcriptional regulator, LysR family.
  
     0.587
SHE92976.1
DNA-binding transcriptional regulator, LysR family.
  
     0.579
dmlR
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.578
SHE43920.1
Hypothetical protein.
       0.500
dmlR-4
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.491
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.