STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF31392.1Complex I intermediate-associated protein 30 (CIA30). (100 aa)    
Predicted Functional Partners:
SHE97476.1
Predicted thiol-disulfide oxidoreductase YuxK, DCC family.
 
    0.706
dacF
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
 
 0.635
SHF57465.1
Hypothetical protein.
 
     0.617
SHF58333.1
Glycoside/pentoside/hexuronide:cation symporter, GPH family.
 
     0.598
ftsN
Sporulation related domain-containing protein.
   
 
 0.557
SHF30474.1
Sporulation related domain-containing protein.
   
 
 0.557
ftsI
Cell division protein FtsI (penicillin-binding protein 3).
   
 
 0.525
mrdA
Peptidoglycan glycosyltransferase.
   
 
 0.525
SHF31367.1
Transposase.
       0.525
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
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