STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF33890.1TRAP-type C4-dicarboxylate transport system, small permease component. (183 aa)    
Predicted Functional Partners:
SHF33920.1
TRAP transporter, DctM subunit.
 
 0.993
SHF33858.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
 
 0.992
SHF88266.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.836
SHF89117.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.836
dctM-12
TRAP transporter, DctM subunit.
 
 
 0.747
SHF94820.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.728
dctM-11
TRAP transporter, DctM subunit.
 
 
 0.703
SHF33828.1
Transcriptional regulator, TetR family.
 
    0.572
SHF94796.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
     0.529
SHG15080.1
malonyl-CoA decarboxylase.
 
 
 0.490
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.