STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF34504.1Hypothetical protein. (217 aa)    
Predicted Functional Partners:
rbsA-3
Mannose ABC transporter ATP-binding protein.
 
     0.893
rbsC
Mannose ABC transporter membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.860
SHF34475.1
Fructokinase.
 
     0.839
rbsB
Mannose-binding protein /fructose-binding protein /ribose-binding protein.
 
     0.785
SHF34636.1
Transcriptional regulator, MarR family.
 
     0.655
glpX
Fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase.
      0.545
mtlK
Mannitol 2-dehydrogenase.
     0.448
SHE91469.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
 
     0.442
SHF34438.1
Hypothetical protein.
       0.415
SHF34673.1
Hypothetical protein.
       0.414
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.