STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF35478.1Uncharacterized conserved protein YgbK, DUF1537 family. (415 aa)    
Predicted Functional Partners:
fucA
Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase.
  
 0.995
hgd-2
3-hydroxyisobutyrate dehydrogenase.
 
  
 0.934
hyi
Hydroxypyruvate isomerase.
 
     0.913
garD
Altronate hydrolase.
 
     0.836
udh
Nucleoside-diphosphate-sugar epimerase.
 
    0.648
sdh
NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.648
ygbM
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
  
 0.561
fucA-2
L-fuculose-phosphate aldolase.
 
  
 0.532
garR
Hypothetical protein.
 
  
 0.482
SHF35111.1
NADP oxidoreductase coenzyme F420-dependent.
 
   
 0.462
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
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