STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF47625.1Hypothetical protein. (200 aa)    
Predicted Functional Partners:
SHF47603.1
ABC-type polysaccharide/polyol phosphate export permease.
 
     0.887
cysQ
3'(2'),5'-bisphosphate nucleotidase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family.
       0.622
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase).
       0.574
SHF47525.1
Glycosyltransferase, GT2 family.
       0.563
SHF51372.1
Protein of unknown function.
  
     0.480
SHF47384.1
Core-2/I-Branching enzyme.
 
     0.447
SHF47358.1
Hypothetical protein.
 
     0.443
SHE51846.1
Hint domain-containing protein.
 
     0.432
SHF47409.1
Glycosyl transferase family 2.
 
     0.418
SHF25395.1
Capsular polysaccharide export protein.
  
     0.403
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.