STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF52729.1Rod binding protein. (96 aa)    
Predicted Functional Partners:
flgD
Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
 
  
 0.983
SHF52709.1
Hook-length control protein FliK.
 
  
 0.977
flgE
Flagellar hook protein FlgE.
 
  
 0.977
fliG
Flagellar motor switch protein FliG.
 
  
 0.971
SHF52752.1
FlgN protein.
 
     0.942
SHF49988.1
Hpt domain-containing protein.
  
    0.927
SHE45270.1
Haem-NO-binding.
   
    0.925
walR
sigma-B regulation protein RsbU (phosphoserine phosphatase).
  
    0.925
SHF56646.1
Serine/threonine-protein kinase RsbW.
   
    0.925
SHF56681.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
    0.925
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
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