STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF46337.1dTDP-4-dehydrorhamnose reductase. (277 aa)    
Predicted Functional Partners:
epsL
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
   
 0.946
pglF
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase; NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
 
   
 0.835
SHF46311.1
Polysaccharide export outer membrane protein.
 
   
 0.831
SHE52237.1
Hint domain-containing protein.
 
    0.564
SHE56002.1
Hypothetical protein.
  
     0.521
SHE45101.1
Uncharacterized membrane protein.
 
     0.500
SHF21893.1
Putative rhamnosyl transferase.
 
     0.492
SHF46461.1
Group 4 capsule polysaccharide lipoprotein gfcB, YjbF.
 
     0.483
rffG
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.483
SHG06778.1
Capsular polysaccharide transport system permease protein.
 
   
 0.468
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
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