STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF66160.1Transcriptional regulator, MarR family. (163 aa)    
Predicted Functional Partners:
SHF51954.1
Hypothetical protein.
 
     0.699
SHF48189.1
comF family protein.
  
    0.644
SHE45307.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
  
 0.625
dprA
DNA protecting protein DprA.
  
    0.624
SHG31736.1
DNA processing protein.
  
    0.624
SHE87383.1
Tellurite resistance protein.
  
     0.606
flgE
Flagellar hook protein FlgE.
  
    0.605
SHE89596.1
Protein of unknown function.
  
     0.602
dctB-3
Hypothetical protein.
 
  
 0.593
SHF28429.1
Methyltransferase domain-containing protein.
 
   
 0.569
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.