STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppB-4Peptide/nickel transport system permease protein. (316 aa)    
Predicted Functional Partners:
gsiD-5
Peptide/nickel transport system permease protein/glutathione transport system permease protein.
  
 0.964
oppF-4
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.964
gsiB-2
Peptide/nickel transport system substrate-binding protein.
 
 0.962
oppD-3
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
   
 0.938
gsiD-2
Peptide/nickel transport system permease protein/oligopeptide transport system permease protein.
  
 0.858
gsiD
Peptide/nickel transport system permease protein.
  
 0.855
gsiD-6
Peptide/nickel transport system permease protein.
  
 0.855
dppC-3
Peptide/nickel transport system permease protein.
  
 0.853
oppC-2
Peptide/nickel transport system permease protein.
  
 0.849
gsiD-8
Peptide/nickel transport system permease protein.
  
 0.848
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.