STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgrR-2Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (301 aa)    
Predicted Functional Partners:
SHF91803.1
Transcriptional regulator, LysR family.
  
     0.628
SHG22285.1
DNA-binding transcriptional regulator, LysR family.
  
     0.603
SHF55155.1
DNA-binding transcriptional regulator, LysR family.
  
     0.582
gbpR
LysR family transcriptional regulator, pca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.456
gbpR-2
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.432
SHF97013.1
Transcriptional regulator, ArsR family.
  
  
 0.429
SHE53464.1
Predicted Peptidoglycan domain-containing protein.
  
     0.415
phoR-2
Two-component system, OmpR family, sensor histidine kinase ChvG.
  
  
 0.414
zntB
Zinc transporter.
  
    0.407
SHE59091.1
Protein of unknown function.
  
     0.400
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.