STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
idnDL-idonate 5-dehydrogenase. (348 aa)    
Predicted Functional Partners:
SHF95651.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.922
siaM
TRAP transporter, DctM subunit.
 
   
 0.821
SHF95677.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
   
 0.739
gno-2
Gluconate 5-dehydrogenase.
 
 0.734
SHF95576.1
Hypothetical protein.
       0.689
SHF87294.1
Gluconate 5-dehydrogenase.
 
 0.685
rspR-4
DNA-binding transcriptional regulator, GntR family.
 
   
 0.679
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.654
mtlK-2
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
 
   
 0.563
SHF35229.1
Lactate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
 0.495
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.