STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF94595.1Spermidine/putrescine transport system ATP-binding protein. (366 aa)    
Predicted Functional Partners:
SHF94623.1
Spermidine/putrescine transport system permease protein.
 
    0.950
SHF94650.1
Spermidine/putrescine transport system permease protein.
 
     0.934
SHF94540.1
Polysaccharide deacetylase.
 
   
 0.832
SHF94679.1
Spermidine/putrescine transport system substrate-binding protein.
 
    0.784
SHF94567.1
aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A.
       0.778
SHF94515.1
Hypothetical protein.
       0.774
potH
Putative spermidine/putrescine transport system permease protein.
 
    0.731
modB
Molybdate transport system permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
     0.710
SHE67476.1
Putative spermidine/putrescine transport system permease protein.
    0.700
SHE67443.1
Putative spermidine/putrescine transport system permease protein.
     0.683
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.