STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG05962.1TRAP-type C4-dicarboxylate transport system, small permease component. (166 aa)    
Predicted Functional Partners:
SHG05988.1
TRAP transporter, DctM subunit.
 
 
 0.968
dctM-6
TRAP transporter, DctM subunit.
 
 
 0.859
siaM
TRAP transporter, DctM subunit.
 
 
 0.857
SHF00578.1
C4-dicarboxylate transporter, DctM subunit.
 
 
 0.845
SHG05934.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.839
SHF33251.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.830
SHF95677.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.814
SHF00647.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.763
SHG06074.1
2-deoxy-D-gluconate 3-dehydrogenase.
  
    0.756
dctM
C4-dicarboxylate transporter, DctM subunit.
 
 
 0.728
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.