STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG09931.1acetyl-CoA C-acetyltransferase. (370 aa)    
Predicted Functional Partners:
fadJ
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
 
 0.929
fadB-3
3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.928
SHG09956.1
Long-chain acyl-CoA synthetase.
 
 
 0.908
lcdH-3
3-hydroxyacyl-CoA dehydrogenase.
 
 
 0.679
hbd
3-hydroxybutyryl-CoA dehydrogenase.
 
 0.672
SHG18325.1
Hypothetical protein.
  
 
 0.666
SHG18822.1
Hypothetical protein.
  
 
 0.666
SHG17980.1
Hypothetical protein.
  
 
 0.666
paaG
Enoyl-CoA hydratase.
  
 0.662
paaF
Enoyl-CoA hydratase.
  
 0.662
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
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