STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG17954.1Crotonobetainyl-CoA:carnitine CoA-transferase CaiB. (381 aa)    
Predicted Functional Partners:
SHG17926.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB.
 
    
0.797
phaJ-2
Acyl dehydratase.
 
 
 0.705
SHG18008.1
Acetyl-CoA acetyltransferase.
 
  
 0.643
SHG17980.1
Hypothetical protein.
 
     0.633
SHG18066.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB.
 
    
0.624
SHG18157.1
Acyl-CoA dehydrogenase.
 
 
 0.603
SHG18128.1
Acyl dehydratase.
  
 
 0.584
SHG00052.1
3-methylfumaryl-CoA hydratase.
 
 0.561
mmgC-4
acyl-CoA dehydrogenase.
 
 0.561
SHG19432.1
3-methylfumaryl-CoA hydratase.
 
 
 0.553
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
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