STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG22204.1CHAT domain-containing protein. (557 aa)    
Predicted Functional Partners:
SHG22177.1
Hypothetical protein.
       0.775
SHG22096.1
Caspase domain-containing protein.
 
     0.703
SHG22123.1
Trypsin.
 
     0.647
SHE97695.1
Sodium/proton antiporter, NhaA family.
  
    0.633
SHG27837.1
Transposase DDE domain-containing protein.
  
     0.536
SHG22150.1
Hypothetical protein.
       0.481
SHG21896.1
Caspase domain-containing protein.
 
     0.431
sigK
RNA polymerase sigma-70 factor, ECF subfamily.
 
  
 0.420
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.