STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG23329.1Hypothetical protein. (104 aa)    
Predicted Functional Partners:
slt-4
Transglycosylase SLT domain-containing protein.
       0.791
SHG23275.1
Type IV secretion system protein VirB2.
       0.755
SHG23353.1
Hypothetical protein.
       0.560
SHG23147.1
Hypothetical protein.
       0.507
SHG23210.1
Hypothetical protein.
       0.507
SHG23126.1
Type IV secretory pathway, VirB6 components.
       0.503
SHG23171.1
Type IV secretion system protein VirB5.
       0.503
SHG23249.1
Type IV secretion system protein VirB3.
       0.503
virB4-2
Type IV secretion system protein VirB4.
       0.494
slt-5
Transglycosylase SLT domain-containing protein.
       0.492
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.