STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG32953.1Type IV secretion system protein VirB3. (70 aa)    
Predicted Functional Partners:
virB4-3
Type IV secretion system protein VirB4.
  
 
 0.935
SHG23249.1
Type IV secretion system protein VirB3.
     
 
0.900
virB4
Type IV secretion system protein VirB4.
  
 
 0.728
SHG11020.1
Type IV secretion system protein VirB4.
  
 
 0.728
virB4-2
Type IV secretion system protein VirB4.
  
 
 0.728
virB2-2
Type IV secretion system protein VirB2.
     
 0.672
SHG10844.1
Type IV secretion system protein VirB8.
  
 
 0.657
ptlE
Type IV secretion system protein VirB8.
  
 
 0.657
SHG26932.1
Type IV secretion system protein VirB8.
  
 
 0.657
SHG27650.1
Type IV secretion system protein VirB8.
  
 
 0.657
Your Current Organism:
Sulfitobacter pseudonitzschiae
NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.