STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK57639.1Transposase, IS605 OrfB family, central region. (195 aa)    
Predicted Functional Partners:
SFK95123.1
Helix-turn-helix domain-containing protein.
 
     0.909
SFL04200.1
Putative transposase DNA-binding domain-containing protein.
 
     0.888
SFL20950.1
Helix-turn-helix domain-containing protein.
 
     0.868
SFK87130.1
Helix-turn-helix domain-containing protein.
 
     0.586
SFK57664.1
Transposase IS200 like.
  
    0.569
SFK93147.1
Helix-turn-helix domain-containing protein.
 
      0.458
SFK97512.1
Transposase, IS605 OrfB family, central region.
  
     0.434
Your Current Organism:
Trichococcus palustris
NCBI taxonomy Id: 140314
Other names: CIP 105359, DSM 9172, Ruminococcus palustris, Ruminococcus palustris DSM 9172T, T. palustris, strain Z-7189
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.