STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK68993.1Putative ABC transport system permease protein. (363 aa)    
Predicted Functional Partners:
SFK69012.1
Putative ABC transport system ATP-binding protein.
 0.994
SFL07403.1
ABC-type lipoprotein export system, ATPase component.
  
 0.974
SFK56107.1
Putative ABC transport system ATP-binding protein.
 
 0.829
SFK61260.1
Putative ABC transport system ATP-binding protein.
 
 0.829
SFK88344.1
Putative ABC transport system ATP-binding protein.
 
 0.829
SFL07114.1
CRP/FNR family transcriptional regulator, anaerobic regulatory protein.
  
 
  0.625
SFK61240.1
HlyD family secretion protein.
  
 0.624
SFK88329.1
Putative ABC transport system permease protein.
  
 
 0.575
SFK56076.1
Putative ABC transport system permease protein.
  
 
 0.557
SFK55201.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
   
 
 0.499
Your Current Organism:
Trichococcus palustris
NCBI taxonomy Id: 140314
Other names: CIP 105359, DSM 9172, Ruminococcus palustris, Ruminococcus palustris DSM 9172T, T. palustris, strain Z-7189
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.