STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK70742.1Phage putative head morphogenesis protein, SPP1 gp7 family. (307 aa)    
Predicted Functional Partners:
SFK70694.1
Phage terminase large subunit.
 
  
 0.950
SFK70717.1
Phage portal protein, SPP1 family.
 
    0.948
SFK70668.1
Phage terminase small subunit.
 
  
 0.947
SFK70855.1
Hypothetical protein.
 
    0.826
SFK70762.1
Hypothetical protein.
       0.727
SFK70784.1
Hypothetical protein.
       0.608
SFK70651.1
Hypothetical protein.
       0.592
SFK70833.1
Protein of unknown function.
 
     0.587
SFK71037.1
Phage tail tape measure protein, TP901 family, core region.
 
   
 0.575
SFK70417.1
Recombination protein RecT.
 
     0.556
Your Current Organism:
Trichococcus palustris
NCBI taxonomy Id: 140314
Other names: CIP 105359, DSM 9172, Ruminococcus palustris, Ruminococcus palustris DSM 9172T, T. palustris, strain Z-7189
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.