STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK78252.1Hypothetical protein. (103 aa)    
Predicted Functional Partners:
SFK61557.1
Ammonium transporter; Belongs to the P(II) protein family.
  
 0.884
SFK84379.1
Ammonium transporter; Belongs to the P(II) protein family.
  
 0.884
SFK89910.1
Nitrogen regulatory protein P-II family/ammonium transporter (TC 1.A.11); Belongs to the P(II) protein family.
  
 0.884
argB
N-acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
    
 
 0.866
SFK72751.1
Protein of unknown function.
 
     0.790
SFK72729.1
Nitrogen regulatory protein P-II family.
  
     0.775
SFK61893.1
Hypothetical protein.
    
 
 0.667
SFK79458.1
Hypothetical protein.
    
 
 0.667
SFL10019.1
Energy-coupling factor transport system substrate-specific component.
    
 
 0.667
SFK64254.1
Glutamate synthase (ferredoxin).
  
  
 0.544
Your Current Organism:
Trichococcus palustris
NCBI taxonomy Id: 140314
Other names: CIP 105359, DSM 9172, Ruminococcus palustris, Ruminococcus palustris DSM 9172T, T. palustris, strain Z-7189
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