STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK85069.1N-terminal domain of peptidoglycan hydrolase CwlO-containing protein. (448 aa)    
Predicted Functional Partners:
SFK79828.1
N-acetylmuramoyl-L-alanine amidase.
  
 
 0.876
SFL20444.1
Flagellum-specific peptidoglycan hydrolase FlgJ.
 
 0.862
SFK56127.1
LysM domain-containing protein.
  
 
 0.822
SFK75407.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
  
 
 0.822
SFK77640.1
Polysaccharide deacetylase family sporulation protein PdaB.
 
 
 0.822
SFK77599.1
LysM repeat-containing protein.
 
 
 0.816
SFK75561.1
N-acetylmuramoyl-L-alanine amidase.
  
 
 0.806
SFL11694.1
CubicO group peptidase, beta-lactamase class C family.
  
 
 0.806
SFL18661.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
  
 
 0.797
SFK75745.1
LysM domain-containing protein.
  
 
 0.787
Your Current Organism:
Trichococcus palustris
NCBI taxonomy Id: 140314
Other names: CIP 105359, DSM 9172, Ruminococcus palustris, Ruminococcus palustris DSM 9172T, T. palustris, strain Z-7189
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.