STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK90025.1Alpha-amylase; Belongs to the glycosyl hydrolase 13 family. (502 aa)    
Predicted Functional Partners:
SFK75954.1
Pullulanase; Belongs to the glycosyl hydrolase 13 family.
 
 0.951
SFK55093.1
Pullulanase; Belongs to the glycosyl hydrolase 13 family.
 
 0.946
SFK57725.1
PTS system, beta-glucosides-specific IIC component.
  
 
 0.932
SFK57745.1
PTS system D-glucose-specific IIA component, Glc family.
  
 
 0.932
SFK94775.1
PTS system, beta-glucosides-specific IIC component.
  
 
 0.932
SFK94827.1
PTS system, glucose-specific IIA component.
  
 
 0.932
SFK95452.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1.
  
 
 0.932
SFL16720.1
PTS system, beta-glucosides-specific IIC component.
  
 
 0.932
SFK57606.1
1,4-alpha-glucan branching enzyme.
 
 
 0.907
SFK62991.1
Starch phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 0.902
Your Current Organism:
Trichococcus palustris
NCBI taxonomy Id: 140314
Other names: CIP 105359, DSM 9172, Ruminococcus palustris, Ruminococcus palustris DSM 9172T, T. palustris, strain Z-7189
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.