STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK92928.1Predicted membrane protein. (244 aa)    
Predicted Functional Partners:
SFK92945.1
Two-component system, NarL family, sensor histidine kinase LiaS.
 
  
 0.990
SFL02151.1
DUF4097 and DUF4098 domain-containing protein YvlB.
 
  
 0.927
SFK92961.1
Two-component system, NarL family, response regulator LiaR.
 
  
 0.906
SFK92139.1
5-bromo-4-chloroindolyl phosphate hydrolysis protein.
  
   
 0.812
SFL04402.1
Gas vesicle protein.
  
     0.763
SFK68873.1
Predicted transcriptional regulator containing CBS domains.
  
     0.745
SFK92124.1
Uncharacterized conserved protein YaaN involved in tellurite resistance; Belongs to the TelA family.
  
   
 0.743
SFL03796.1
Uncharacterized protein YjbK.
  
     0.727
SFK78130.1
Uncharacterized membrane protein, required for colicin V production.
  
     0.721
SFK54283.1
Oxygen-independent coproporphyrinogen-3 oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
     0.693
Your Current Organism:
Trichococcus palustris
NCBI taxonomy Id: 140314
Other names: CIP 105359, DSM 9172, Ruminococcus palustris, Ruminococcus palustris DSM 9172T, T. palustris, strain Z-7189
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.