STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL05650.1Oxaloacetate decarboxylase, beta subunit; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD). (373 aa)    
Predicted Functional Partners:
SFL05631.1
Biotin-requiring enzyme.
 
 
 0.942
SFK67563.1
Oxaloacetate decarboxylase, alpha subunit.
  
 
 0.906
SFK83136.1
Oxaloacetate decarboxylase, alpha subunit.
  
 
 0.906
SFK96336.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.896
SFL05773.1
Oxaloacetate decarboxylase, alpha subunit.
  
 
 0.884
SFK83106.1
Biotin-requiring enzyme.
 
  
 0.871
SFK64092.1
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
    
  0.852
SFK63562.1
Pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family.
    
 0.851
SFK57427.1
Acetolactate synthase, large subunit.
     
 0.844
SFK69809.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.844
Your Current Organism:
Trichococcus palustris
NCBI taxonomy Id: 140314
Other names: CIP 105359, DSM 9172, Ruminococcus palustris, Ruminococcus palustris DSM 9172T, T. palustris, strain Z-7189
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.