STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL07317.1Protein of unknown function. (602 aa)    
Predicted Functional Partners:
SFK89128.1
Sporulation and spore germination.
  
     0.703
SFK56266.1
Protein of unknown function.
  
     0.645
SFL07764.1
Polyhydroxyalkanoate synthesis regulator phasin.
  
     0.634
SFL07332.1
ABC-2 type transport system permease protein.
  
    0.623
SFL07350.1
ABC-2 type transport system ATP-binding protein.
       0.623
SFK56231.1
Protein of unknown function.
  
     0.609
SFK73529.1
UV-damage endonuclease.
  
     0.596
SFK61041.1
UDP-2,3-diacylglucosamine pyrophosphatase LpxH.
  
   
 0.580
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
    
  0.573
SFK87470.1
Prolycopene isomerase.
  
   
 0.557
Your Current Organism:
Trichococcus palustris
NCBI taxonomy Id: 140314
Other names: CIP 105359, DSM 9172, Ruminococcus palustris, Ruminococcus palustris DSM 9172T, T. palustris, strain Z-7189
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.