STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL09126.1Copper transport repressor, CopY/TcrY family. (159 aa)    
Predicted Functional Partners:
SFL09109.1
Cu+-exporting ATPase.
  
  
 0.956
SFL09089.1
Copper chaperone CopZ.
  
  
 0.934
SFL07051.1
Copper chaperone CopZ.
  
  
 0.675
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
    
  0.645
SFK61099.1
Predicted protein.
     
 0.598
SFK88329.1
Putative ABC transport system permease protein.
 
  
  0.545
htpX
Heat shock protein HtpX; Belongs to the peptidase M48B family.
  
 
  0.499
SFK61723.1
Hypothetical protein.
    
  0.479
SFL09145.1
AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase.
       0.474
SFK79828.1
N-acetylmuramoyl-L-alanine amidase.
    
  0.432
Your Current Organism:
Trichococcus palustris
NCBI taxonomy Id: 140314
Other names: CIP 105359, DSM 9172, Ruminococcus palustris, Ruminococcus palustris DSM 9172T, T. palustris, strain Z-7189
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.