STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL11324.1Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family. (768 aa)    
Predicted Functional Partners:
uxaC
D-glucuronate isomerase.
 
 
 0.956
SFK73613.1
YhcH/YjgK/YiaL family protein.
   
 0.911
SFK77794.1
Phosphotransferase system eiib component type 2/3; PTS system lactose-specific IIB component, Lac family (TC 4.A.3.1.1)/PTS system lactose-specific IIC component, Lac family (TC 4.A.3.1.1).
   
 
 0.880
SFL11680.1
Beta-xylosidase.
    
 0.880
SFL11341.1
AraC-type DNA-binding protein.
 
  
 0.785
SFK85327.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.763
SFK94478.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.761
SFK74675.1
PTS system, galactitol-specific IIC component.
   
  
 0.757
SFK94949.1
PTS system, galactitol-specific IIC component.
   
  
 0.757
SFK57683.1
Ribose 5-phosphate isomerase B.
   
    0.746
Your Current Organism:
Trichococcus palustris
NCBI taxonomy Id: 140314
Other names: CIP 105359, DSM 9172, Ruminococcus palustris, Ruminococcus palustris DSM 9172T, T. palustris, strain Z-7189
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.