STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL13173.1Uncharacterized protein YvpB. (280 aa)    
Predicted Functional Partners:
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
  0.884
guaB
IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.880
cinA
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
  0.869
SFK75561.1
N-acetylmuramoyl-L-alanine amidase.
  
 
 0.866
SFK75745.1
LysM domain-containing protein.
 
  
 0.856
SFK77599.1
LysM repeat-containing protein.
  
 
 0.849
SFL20444.1
Flagellum-specific peptidoglycan hydrolase FlgJ.
  
 
 0.849
SFK53712.1
Hypothetical protein.
 
  
  0.792
SFL01987.1
Asparagine synthase (glutamine-hydrolysing).
 
     0.724
SFL02785.1
CsbD-like; Belongs to the UPF0337 (CsbD) family.
   
    0.620
Your Current Organism:
Trichococcus palustris
NCBI taxonomy Id: 140314
Other names: CIP 105359, DSM 9172, Ruminococcus palustris, Ruminococcus palustris DSM 9172T, T. palustris, strain Z-7189
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