STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL14279.1Two component transcriptional regulator, LytTR family. (260 aa)    
Predicted Functional Partners:
SFL14297.1
Two-component system, LytT family, sensor kinase.
 0.998
SFK93995.1
Two-component system, CitB family, response regulator MalR.
  
  
 0.677
SFL05525.1
Signal transduction histidine kinase.
 
  
 0.665
SFK94011.1
Sensor histidine kinase regulating citrate/malate metabolism.
 
 
 0.630
SFL14261.1
MFS transporter, OFA family, oxalate/formate antiporter.
 
   
 0.578
SFL20187.1
Signal transduction histidine kinase.
  
 
 0.543
proA
Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
    
   0.515
SFK92107.1
Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family.
   
    0.448
SFK58533.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
  
 0.426
SFK69995.1
Two-component system, OmpR family, response regulator ResD.
  
  
 0.426
Your Current Organism:
Trichococcus palustris
NCBI taxonomy Id: 140314
Other names: CIP 105359, DSM 9172, Ruminococcus palustris, Ruminococcus palustris DSM 9172T, T. palustris, strain Z-7189
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