STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL17213.1GntR family transcriptional regulator. (238 aa)    
Predicted Functional Partners:
SFK96336.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.870
SFK58634.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
    0.842
SFL17198.1
PTS system, cellobiose-specific IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
    0.732
SFK97410.1
AraC-type DNA-binding protein.
 
  
 0.654
SFK64591.1
Transcriptional regulator, XRE family with cupin sensor.
  
  
 0.607
SFK85273.1
AraC-type DNA-binding protein.
  
  
 0.582
SFL06974.1
AraC-type DNA-binding protein.
  
  
 0.582
SFK57725.1
PTS system, beta-glucosides-specific IIC component.
  
 
 0.579
SFK57745.1
PTS system D-glucose-specific IIA component, Glc family.
  
 
 0.579
SFK94775.1
PTS system, beta-glucosides-specific IIC component.
  
 
 0.579
Your Current Organism:
Trichococcus palustris
NCBI taxonomy Id: 140314
Other names: CIP 105359, DSM 9172, Ruminococcus palustris, Ruminococcus palustris DSM 9172T, T. palustris, strain Z-7189
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.