STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL17598.1L-xylulose 5-phosphate 3-epimerase. (288 aa)    
Predicted Functional Partners:
SFL17618.1
L-ribulose 5-phosphate 4-epimerase.
 
 0.993
SFL17632.1
PTS system IIB component, L-Asc family.
 
     0.947
SFL17647.1
PTS system IIC component, L-Asc family.
 
     0.921
SFL17685.1
L-ascorbate 6-phosphate lactonase.
 
     0.906
SFL17666.1
PTS system IIA component, L-Asc family.
 
  
  0.893
SFL02560.1
PTS system, fructose-specific IIC component.
  
 
 0.863
SFL20115.1
Hypothetical protein.
 
     0.802
SFL08699.1
Sugar or nucleoside kinase, ribokinase family.
  
 
 0.661
SFK63415.1
2-dehydro-3-deoxygluconokinase.
  
 
 0.647
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 
 0.647
Your Current Organism:
Trichococcus palustris
NCBI taxonomy Id: 140314
Other names: CIP 105359, DSM 9172, Ruminococcus palustris, Ruminococcus palustris DSM 9172T, T. palustris, strain Z-7189
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.